Variant report

Variant	rs17757020
Chromosome Location	chr1:210396557-210396558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210394665..210397584-chr1:210404970..210407618,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082497	Chromatin interaction
ENSG00000203706	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs34285465	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34367805	0.83[AMR][1000 genomes]
rs35028401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55673030	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210395200-210397200	Enhancers	Rectal Smooth Muscle	rectum
2	chr1:210395400-210396600	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr1:210395400-210396800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:210395400-210396800	Enhancers	NHEK	skin
5	chr1:210395600-210396800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:210395600-210396800	Enhancers	HSMMtube	muscle
7	chr1:210395600-210397000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:210395800-210396800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr1:210395800-210396800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:210395800-210396800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:210395800-210396800	Enhancers	Colonic Mucosa	Colon
12	chr1:210395800-210396800	Enhancers	Fetal Muscle Leg	muscle
13	chr1:210395800-210397000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr1:210395800-210397200	Enhancers	Colon Smooth Muscle	Colon
15	chr1:210396000-210396600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr1:210396000-210396600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
17	chr1:210396000-210396800	Enhancers	NH-A	brain
18	chr1:210396000-210397000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr1:210396000-210397000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:210396000-210397200	Enhancers	Duodenum Mucosa	Duodenum
21	chr1:210396000-210397200	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr1:210396000-210397200	Enhancers	Stomach Smooth Muscle	stomach
23	chr1:210396000-210397600	Enhancers	Fetal Kidney	kidney
24	chr1:210396200-210396600	Bivalent Enhancer	Fetal Heart	heart
25	chr1:210396200-210397000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr1:210396200-210397000	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr1:210396200-210397000	Enhancers	Fetal Stomach	stomach
28	chr1:210396200-210397000	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr1:210396200-210397200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr1:210396200-210397200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:210396200-210397200	Enhancers	Small Intestine	intestine
32	chr1:210396200-210397200	Enhancers	Stomach Mucosa	stomach
33	chr1:210396200-210397200	Bivalent Enhancer	NHDF-Ad	bronchial
34	chr1:210396400-210396800	Enhancers	Aorta	Aorta
35	chr1:210396400-210396800	Enhancers	Brain Substantia Nigra	brain
36	chr1:210396400-210397000	Enhancers	Left Ventricle	heart
37	chr1:210396400-210397000	Enhancers	Placenta Amnion	Placenta Amnion
38	chr1:210396400-210397200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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