Variant report

Variant	rs34367805
Chromosome Location	chr1:210485768-210485769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17757020	0.83[AMR][1000 genomes]
rs35028401	0.83[AMR][1000 genomes]
rs61828659	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv8769	chr1:210403509-210564588	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	126 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210485000-210485800	Enhancers	Fetal Muscle Leg	muscle
2	chr1:210485000-210485800	Enhancers	Fetal Stomach	stomach
3	chr1:210485000-210486200	Enhancers	Fetal Muscle Trunk	muscle
4	chr1:210485000-210486600	Weak transcription	Fetal Brain Male	brain
5	chr1:210485000-210487000	Enhancers	Fetal Lung	lung
6	chr1:210485400-210485800	Active TSS	Stomach Smooth Muscle	stomach
7	chr1:210485400-210485800	Active TSS	NHLF	lung
8	chr1:210485400-210487400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:210485600-210485800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:210485600-210485800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:210485600-210485800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
12	chr1:210485600-210486000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:210485600-210486000	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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