Variant report

Variant	rs17757229
Chromosome Location	chr14:79141106-79141107
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11159373	0.90[CEU][hapmap];0.81[CHB][hapmap];0.83[EUR][1000 genomes]
rs1158079	0.81[CEU][hapmap]
rs1158081	0.80[CEU][hapmap]
rs11624715	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12590659	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17108079	0.81[CEU][hapmap]
rs17835416	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55661918	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56151199	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs57288222	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6574457	1.00[CEU][hapmap];0.82[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67977214	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs68019258	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7142482	0.90[CEU][hapmap];0.82[CHB][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7143785	0.90[CEU][hapmap]
rs7144972	0.88[CHB][hapmap]
rs7149289	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7153536	0.90[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7153907	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7158392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7158798	0.80[CEU][hapmap]
rs723851	0.90[CEU][hapmap]
rs8013926	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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