Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11159373	1.00[CEU][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs1158079	0.89[CEU][hapmap]
rs1158080	0.89[CEU][hapmap]
rs1158081	0.89[CEU][hapmap]
rs11624715	0.94[CEU][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11625950	0.81[CEU][hapmap];0.92[JPT][hapmap]
rs12590659	0.90[CEU][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes]
rs17108041	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs17108079	0.89[CEU][hapmap]
rs17108083	0.89[CEU][hapmap]
rs17757229	0.90[CEU][hapmap]
rs17835416	0.90[CEU][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs55661918	0.83[EUR][1000 genomes]
rs56151199	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57288222	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61976141	0.83[ASN][1000 genomes]
rs6574457	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs67977214	0.92[EUR][1000 genomes]
rs68019258	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7142482	1.00[CEU][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7149289	0.90[CEU][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs7153536	1.00[CEU][hapmap];0.90[TSI][hapmap]
rs7153907	0.90[CEU][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs7158202	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7158392	0.90[CEU][hapmap]
rs7158798	0.89[CEU][hapmap]
rs8013926	0.90[CEU][hapmap];0.84[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2757578	chr14:79055398-79140536	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs723851	C14orf174	cis	parietal	SCAN
rs723851	FCF1	cis	parietal	SCAN
rs723851	GTF2A1	cis	parietal	SCAN
rs723851	PGF	cis	cerebellum	SCAN
rs723851	ALKBH1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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