Variant report
| Variant | rs17757626 |
|---|---|
| Chromosome Location | chr2:114883430-114883431 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr2:114883422-114883607 | A549 | lung: | n/a | chr2:114883459-114883476 chr2:114883525-114883536 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000235242 | TF binding region |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs12613644 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57108829 | 0.94[EUR][1000 genomes] |
| rs57662086 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60427263 | 0.81[AFR][1000 genomes] |
| rs67320701 | 0.98[EUR][1000 genomes] |
| rs67972643 | 0.81[EUR][1000 genomes] |
| rs72837252 | 1.00[ASN][1000 genomes] |
| rs72837253 | 1.00[ASN][1000 genomes] |
| rs72837258 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72837259 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72837260 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72837296 | 0.94[EUR][1000 genomes] |
| rs72839122 | 0.81[EUR][1000 genomes] |
| rs7562920 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv874904 | chr2:114751691-115605062 | Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv829624 | chr2:114791945-115119926 | Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv3381703 | chr2:114794745-114989429 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:114881400-114887600 | Weak transcription | Fetal Lung | lung |
