Variant report

Variant	rs1776043
Chromosome Location	chr1:220105669-220105670
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10863510	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10863511	0.80[EUR][1000 genomes]
rs1694592	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1694593	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1694594	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1694595	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1776029	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1776030	0.87[EUR][1000 genomes]
rs1776046	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1776050	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1776052	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2275707	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2378331	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs6541114	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6541115	0.81[EUR][1000 genomes]
rs6663638	0.85[EUR][1000 genomes]
rs6663745	0.85[EUR][1000 genomes]
rs7525274	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs947517	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006393	chr1:219925261-220126458	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220102800-220106200	Enhancers	Liver	Liver
2	chr1:220103400-220105800	Enhancers	Fetal Intestine Small	intestine
3	chr1:220104800-220108000	Weak transcription	K562	blood
4	chr1:220105200-220107800	Weak transcription	HepG2	liver
5	chr1:220105600-220113800	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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