Variant report

Variant	rs7525274
Chromosome Location	chr1:220100070-220100071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:220090638..220094600-chr1:220096572..220101080,9	K562	blood:
2	chr1:220082601..220085803-chr1:220097043..220100830,4	K562	blood:
3	chr1:220081392..220084316-chr1:220098102..220100494,2	K562	blood:
4	chr1:220088203..220094141-chr1:220096602..220103368,9	K562	blood:
5	chr1:220099799..220101397-chr1:220262423..220264916,2	K562	blood:

Variant related genes	Relation type
ENSG00000162813	Chromatin interaction
ENSG00000196660	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10863510	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11118467	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1694592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1694593	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1694594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1694595	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1776029	0.85[AMR][1000 genomes]
rs1776030	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1776043	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1776046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1776050	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1776052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2275707	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2647439	0.85[EUR][1000 genomes]
rs6541114	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6663638	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6663745	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs947517	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006393	chr1:219925261-220126458	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220089000-220101000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:220099600-220100200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
3	chr1:220099600-220100200	Flanking Active TSS	Duodenum Mucosa	Duodenum
4	chr1:220099600-220100200	Enhancers	Fetal Brain Male	brain
5	chr1:220099600-220100200	Flanking Active TSS	Fetal Intestine Large	intestine
6	chr1:220099600-220100200	Flanking Active TSS	Hela-S3	cervix
7	chr1:220099600-220100200	Transcr. at gene 5' and 3'	K562	blood
8	chr1:220099600-220101000	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
9	chr1:220099600-220101200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
10	chr1:220099600-220102000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:220099600-220102200	Active TSS	Brain Angular Gyrus	brain
12	chr1:220099600-220102400	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr1:220099800-220100200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
14	chr1:220099800-220100200	Enhancers	Fetal Brain Female	brain
15	chr1:220099800-220100200	Flanking Bivalent TSS/Enh	HepG2	liver
16	chr1:220099800-220101200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
17	chr1:220099800-220102000	Active TSS	Brain Substantia Nigra	brain
18	chr1:220099800-220102200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
19	chr1:220099800-220102400	Active TSS	Brain Anterior Caudate	brain
20	chr1:220100000-220100400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr1:220100000-220100400	Active TSS	Fetal Intestine Small	intestine
22	chr1:220100000-220100600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr1:220100000-220100600	Active TSS	Brain Germinal Matrix	brain
24	chr1:220100000-220101200	Bivalent/Poised TSS	Colonic Mucosa	Colon
25	chr1:220100000-220101200	Weak transcription	Pancreas	Pancrea
26	chr1:220100000-220101200	Weak transcription	Right Atrium	heart
27	chr1:220100000-220102000	Active TSS	Liver	Liver
28	chr1:220100000-220102800	Active TSS	Brain Cingulate Gyrus	brain

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