Variant report

Variant	rs11118467
Chromosome Location	chr1:220127269-220127270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1694592	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1694593	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1694594	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1694595	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1776030	0.82[EUR][1000 genomes]
rs1776046	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1776052	0.84[EUR][1000 genomes]
rs2275707	0.84[EUR][1000 genomes]
rs2647439	0.82[EUR][1000 genomes]
rs7525274	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427930	chr1:220120379-220333434	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	744 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220123600-220128200	Weak transcription	HepG2	liver
2	chr1:220126400-220127400	Weak transcription	Liver	Liver
3	chr1:220127000-220128200	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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