Variant report

Variant	rs17764137
Chromosome Location	chr14:80062316-80062317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10148779	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1364604	0.87[ASN][1000 genomes]
rs1364606	0.87[ASN][1000 genomes]
rs1544726	0.87[ASN][1000 genomes]
rs59300744	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7141526	0.87[ASN][1000 genomes]
rs7148240	0.87[ASN][1000 genomes]
rs7154918	0.85[ASN][1000 genomes]
rs7156216	0.85[ASN][1000 genomes]
rs7160334	0.89[ASN][1000 genomes]
rs73326050	0.87[ASN][1000 genomes]
rs9323674	0.87[ASN][1000 genomes]
rs9652379	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv869542	chr14:80009619-80118315	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80011800-80069200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:80047600-80068800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr14:80061400-80064400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr14:80061600-80062800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:80061600-80064600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr14:80062200-80062400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr14:80062200-80062600	Enhancers	NHLF	lung
8	chr14:80062200-80062800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr14:80062200-80064400	Enhancers	Hela-S3	cervix
10	chr14:80062200-80064600	Enhancers	Osteobl	bone
11	chr14:80062200-80065800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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