Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10137102	0.81[YRI][hapmap]
rs10149978	0.93[YRI][hapmap];0.86[AFR][1000 genomes]
rs10467836	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs1364604	0.85[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1364606	0.98[ASN][1000 genomes]
rs1544726	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1544842	1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[ASN][1000 genomes]
rs17109451	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs17109500	0.81[YRI][hapmap]
rs17764137	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59093010	0.87[EUR][1000 genomes]
rs59300744	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7141526	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7145283	0.83[EUR][1000 genomes]
rs7148240	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.98[ASN][1000 genomes]
rs7154918	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7156216	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[ASN][1000 genomes]
rs7157577	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs7160334	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs73326050	0.98[ASN][1000 genomes]
rs9323674	0.98[ASN][1000 genomes]
rs9652379	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv902112	chr14:79939393-80050771	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv869542	chr14:80009619-80118315	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80011800-80069200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:80014400-80037800	Weak transcription	Aorta	Aorta
3	chr14:80027200-80030400	Enhancers	Brain Germinal Matrix	brain
4	chr14:80027400-80029000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:80027400-80029000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr14:80027400-80029600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:80027400-80034400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr14:80027600-80029400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr14:80027600-80036600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:80027800-80029000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr14:80028200-80034600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr14:80028200-80034800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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