Variant report

Variant	rs10137102
Chromosome Location	chr14:80037004-80037005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10132897	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10134188	0.97[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10141349	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10148779	0.81[YRI][hapmap]
rs10149978	0.88[YRI][hapmap];0.82[AFR][1000 genomes]
rs10162315	1.00[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1364604	0.85[YRI][hapmap]
rs1544726	0.92[ASW][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes]
rs1544842	0.89[YRI][hapmap]
rs17109461	1.00[CEU][hapmap];0.90[TSI][hapmap];0.89[EUR][1000 genomes]
rs17109500	0.92[ASW][hapmap];1.00[CEU][hapmap];0.88[LWK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17764119	1.00[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17764298	1.00[ASN][1000 genomes]
rs17764397	1.00[ASN][1000 genomes]
rs17836262	1.00[ASN][1000 genomes]
rs17836264	1.00[ASN][1000 genomes]
rs17836266	1.00[ASN][1000 genomes]
rs17836292	1.00[ASN][1000 genomes]
rs17836306	1.00[ASN][1000 genomes]
rs28519457	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28584086	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61153207	0.97[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7141526	0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs7148240	0.86[ASW][hapmap];0.89[YRI][hapmap]
rs7154918	0.92[YRI][hapmap];0.88[AFR][1000 genomes]
rs7156216	0.86[ASW][hapmap];0.87[MKK][hapmap];0.89[YRI][hapmap]
rs7160334	0.92[ASW][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs73326053	0.98[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73326059	0.97[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73326100	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73332255	1.00[ASN][1000 genomes]
rs8006556	1.00[ASN][1000 genomes]
rs8010135	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9652379	0.92[YRI][hapmap];0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv902112	chr14:79939393-80050771	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv869542	chr14:80009619-80118315	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv518333	chr14:80035594-80041626	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80011800-80069200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:80014400-80037800	Weak transcription	Aorta	Aorta
3	chr14:80034800-80038200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:80035400-80041200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr14:80035600-80037400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr14:80035600-80041000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr14:80035600-80041200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr14:80035600-80041200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr14:80035600-80041200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr14:80035600-80041200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr14:80035800-80037200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:80035800-80037200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:80035800-80040000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr14:80036600-80037200	Enhancers	Brain Substantia Nigra	brain
15	chr14:80036600-80038000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:80036800-80038000	Enhancers	Brain Germinal Matrix	brain
17	chr14:80037000-80038000	Enhancers	Brain Hippocampus Middle	brain
18	chr14:80037000-80038000	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr14:80037000-80044600	Weak transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links