Variant report

Variant	rs17109461
Chromosome Location	chr14:80035594-80035595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10132897	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10134188	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10137102	1.00[CEU][hapmap];0.90[TSI][hapmap];0.89[EUR][1000 genomes]
rs10141349	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10162315	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10162571	0.88[ASW][hapmap];1.00[MEX][hapmap]
rs10483925	0.88[ASW][hapmap];1.00[MEX][hapmap]
rs11844619	1.00[MEX][hapmap]
rs17109500	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17764119	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs28519457	0.94[EUR][1000 genomes]
rs28584086	1.00[EUR][1000 genomes]
rs61153207	1.00[EUR][1000 genomes]
rs6574509	1.00[MEX][hapmap]
rs7144465	1.00[MEX][hapmap]
rs7145924	0.88[ASW][hapmap];1.00[MEX][hapmap]
rs7153889	1.00[MEX][hapmap]
rs73326053	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326059	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326100	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73327923	0.82[AFR][1000 genomes]
rs8010135	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv902112	chr14:79939393-80050771	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv869542	chr14:80009619-80118315	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv518333	chr14:80035594-80041626	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80011800-80069200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:80014400-80037800	Weak transcription	Aorta	Aorta
3	chr14:80027600-80036600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:80033400-80036000	Enhancers	Brain Hippocampus Middle	brain
5	chr14:80033800-80035800	Enhancers	Brain Germinal Matrix	brain
6	chr14:80034200-80036200	Enhancers	Brain Substantia Nigra	brain
7	chr14:80034400-80035600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr14:80034400-80035600	Enhancers	Brain Cingulate Gyrus	brain
9	chr14:80034400-80035800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:80034400-80035800	Enhancers	Brain Angular Gyrus	brain
11	chr14:80034400-80035800	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr14:80034600-80035600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr14:80034600-80035800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:80034800-80035600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr14:80034800-80035600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr14:80034800-80035600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr14:80034800-80035800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr14:80034800-80035800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr14:80034800-80035800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr14:80034800-80038200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr14:80035000-80037000	Enhancers	Placenta Amnion	Placenta Amnion
22	chr14:80035400-80036800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr14:80035400-80041200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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