Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10132897	1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10134188	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137102	1.00[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10141349	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10162315	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109461	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17109500	1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17764298	1.00[ASN][1000 genomes]
rs17764397	1.00[ASN][1000 genomes]
rs17836262	1.00[ASN][1000 genomes]
rs17836264	1.00[ASN][1000 genomes]
rs17836266	1.00[ASN][1000 genomes]
rs17836292	1.00[ASN][1000 genomes]
rs17836306	1.00[ASN][1000 genomes]
rs28519457	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28584086	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61153207	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73326053	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73326059	0.94[EUR][1000 genomes]
rs73326100	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73332255	1.00[ASN][1000 genomes]
rs8006556	1.00[ASN][1000 genomes]
rs8010135	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv869542	chr14:80009619-80118315	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80011800-80069200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:80045200-80062200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:80047600-80068800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr14:80053800-80062200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr14:80054200-80060600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr14:80057200-80061200	Weak transcription	Osteobl	bone
7	chr14:80057800-80058800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr14:80057800-80060200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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