Variant report

Variant	rs17836292
Chromosome Location	chr14:80174924-80174925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10132897	1.00[ASN][1000 genomes]
rs10134188	1.00[ASN][1000 genomes]
rs10137102	1.00[ASN][1000 genomes]
rs10141349	1.00[ASN][1000 genomes]
rs10162315	1.00[ASN][1000 genomes]
rs10400691	0.81[EUR][1000 genomes]
rs17109500	1.00[ASN][1000 genomes]
rs17764119	1.00[ASN][1000 genomes]
rs17764298	1.00[ASN][1000 genomes]
rs17764397	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17836262	1.00[ASN][1000 genomes]
rs17836264	1.00[ASN][1000 genomes]
rs17836266	1.00[ASN][1000 genomes]
rs17836306	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28519457	1.00[ASN][1000 genomes]
rs28584086	1.00[ASN][1000 genomes]
rs61153207	1.00[ASN][1000 genomes]
rs73326053	1.00[ASN][1000 genomes]
rs73326100	1.00[ASN][1000 genomes]
rs73332255	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006556	1.00[ASN][1000 genomes]
rs8010135	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80161600-80175800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr14:80169200-80175200	Weak transcription	Brain Substantia Nigra	brain
3	chr14:80171400-80232800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr14:80173600-80175000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr14:80174600-80175000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr14:80174600-80177600	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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