Variant report

Variant	rs10400691
Chromosome Location	chr14:80172090-80172091
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17764397	0.81[EUR][1000 genomes]
rs17836292	0.81[EUR][1000 genomes]
rs17836306	0.81[EUR][1000 genomes]
rs73332255	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80161600-80175800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr14:80169200-80175200	Weak transcription	Brain Substantia Nigra	brain
3	chr14:80169800-80173600	Enhancers	Fetal Intestine Large	intestine
4	chr14:80170000-80173400	Enhancers	Fetal Intestine Small	intestine
5	chr14:80170200-80172400	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr14:80170400-80173200	Enhancers	Fetal Lung	lung
7	chr14:80171000-80172400	Weak transcription	Brain Germinal Matrix	brain
8	chr14:80171200-80172200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr14:80171400-80232800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr14:80172000-80172400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
11	chr14:80172000-80173400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr14:80172000-80173600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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