Variant report
| Variant | rs73332255 |
|---|---|
| Chromosome Location | chr14:80184546-80184547 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:80182144..80185656-chr14:80186406..80189351,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10132897 | 1.00[ASN][1000 genomes] |
| rs10134188 | 1.00[ASN][1000 genomes] |
| rs10137102 | 1.00[ASN][1000 genomes] |
| rs10141349 | 1.00[ASN][1000 genomes] |
| rs10162315 | 1.00[ASN][1000 genomes] |
| rs10400691 | 0.88[EUR][1000 genomes] |
| rs17109500 | 1.00[ASN][1000 genomes] |
| rs17764119 | 1.00[ASN][1000 genomes] |
| rs17764298 | 1.00[ASN][1000 genomes] |
| rs17764397 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17836262 | 1.00[ASN][1000 genomes] |
| rs17836264 | 1.00[ASN][1000 genomes] |
| rs17836266 | 1.00[ASN][1000 genomes] |
| rs17836292 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17836306 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28519457 | 1.00[ASN][1000 genomes] |
| rs28584086 | 1.00[ASN][1000 genomes] |
| rs61153207 | 1.00[ASN][1000 genomes] |
| rs73326053 | 1.00[ASN][1000 genomes] |
| rs73326100 | 1.00[ASN][1000 genomes] |
| rs8006556 | 1.00[ASN][1000 genomes] |
| rs8010135 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1045241 | chr14:79885361-80734201 | Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1039622 | chr14:79908702-80266601 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv902113 | chr14:80172094-80929699 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:80171400-80232800 | Weak transcription | Stomach Smooth Muscle | stomach |
| 2 | chr14:80178200-80196200 | Weak transcription | Aorta | Aorta |
