Variant report
| Variant | rs8006556 |
|---|---|
| Chromosome Location | chr14:80121197-80121198 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10132897 | 1.00[ASN][1000 genomes] |
| rs10134188 | 1.00[ASN][1000 genomes] |
| rs10137102 | 1.00[ASN][1000 genomes] |
| rs10141349 | 1.00[ASN][1000 genomes] |
| rs10162315 | 1.00[ASN][1000 genomes] |
| rs1424840 | 1.00[YRI][hapmap] |
| rs17109500 | 1.00[ASN][1000 genomes] |
| rs17764119 | 1.00[ASN][1000 genomes] |
| rs17764298 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17764397 | 1.00[ASN][1000 genomes] |
| rs17836262 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17836264 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17836266 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17836292 | 1.00[ASN][1000 genomes] |
| rs17836306 | 1.00[ASN][1000 genomes] |
| rs28519457 | 1.00[ASN][1000 genomes] |
| rs28584086 | 1.00[ASN][1000 genomes] |
| rs61153207 | 1.00[ASN][1000 genomes] |
| rs73326053 | 1.00[ASN][1000 genomes] |
| rs73326100 | 1.00[ASN][1000 genomes] |
| rs73332255 | 1.00[ASN][1000 genomes] |
| rs8010135 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1045241 | chr14:79885361-80734201 | Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1039622 | chr14:79908702-80266601 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1370 | chr14:80103510-80121890 | Active TSS Enhancers Weak transcription Flanking Active TSS | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:80113200-80135400 | Weak transcription | Stomach Smooth Muscle | stomach |
