Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10132897	1.00[ASN][1000 genomes]
rs10134188	1.00[ASN][1000 genomes]
rs10137102	1.00[ASN][1000 genomes]
rs10141349	1.00[ASN][1000 genomes]
rs10162315	1.00[ASN][1000 genomes]
rs10483928	0.92[CEU][hapmap]
rs1424840	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs17109500	1.00[ASN][1000 genomes]
rs17764119	1.00[ASN][1000 genomes]
rs17764298	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17764397	1.00[ASN][1000 genomes]
rs17836264	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17836266	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17836292	1.00[ASN][1000 genomes]
rs17836306	1.00[ASN][1000 genomes]
rs28519457	1.00[ASN][1000 genomes]
rs28584086	1.00[ASN][1000 genomes]
rs61153207	1.00[ASN][1000 genomes]
rs73326053	1.00[ASN][1000 genomes]
rs73326100	1.00[ASN][1000 genomes]
rs73332255	1.00[ASN][1000 genomes]
rs8006556	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8010135	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80113200-80135400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:80129200-80135400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr14:80131000-80131600	Enhancers	Brain Substantia Nigra	brain

Quick Search: