Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10132897	1.00[ASN][1000 genomes]
rs10134188	1.00[ASN][1000 genomes]
rs10137102	1.00[ASN][1000 genomes]
rs10141349	1.00[ASN][1000 genomes]
rs10162315	1.00[ASN][1000 genomes]
rs10483928	0.91[CEU][hapmap]
rs1424840	1.00[CEU][hapmap]
rs17109500	1.00[ASN][1000 genomes]
rs17109508	0.81[GIH][hapmap]
rs17764119	1.00[ASN][1000 genomes]
rs17764397	1.00[ASN][1000 genomes]
rs17836262	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17836264	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17836266	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17836292	1.00[ASN][1000 genomes]
rs17836306	1.00[ASN][1000 genomes]
rs28519457	1.00[ASN][1000 genomes]
rs28584086	1.00[ASN][1000 genomes]
rs61153207	1.00[ASN][1000 genomes]
rs73326053	1.00[ASN][1000 genomes]
rs73326100	1.00[ASN][1000 genomes]
rs73332255	1.00[ASN][1000 genomes]
rs8006556	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8010135	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17764298	EIF2B2	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80113200-80135400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:80125600-80127000	Weak transcription	Brain Germinal Matrix	brain
3	chr14:80126200-80126600	Weak transcription	Fetal Kidney	kidney
4	chr14:80126200-80130800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr14:80126400-80126600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:80126400-80126800	Enhancers	Brain Substantia Nigra	brain
7	chr14:80126400-80127000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search: