Variant report

Variant	rs1776447
Chromosome Location	chr6:37602460-37602461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37593545..37595641-chr6:37601090..37603984,2	K562	blood:
2	chr6:37592329..37594327-chr6:37602082..37603969,2	MCF-7	breast:
3	chr6:37599758..37602608-chr6:37603760..37606026,2	MCF-7	breast:
4	chr6:37597500..37600004-chr6:37601330..37604250,3	K562	blood:
5	chr6:37601797..37603781-chr6:37603910..37605765,2	K562	blood:
6	chr6:37601806..37604048-chr6:37613605..37615961,2	MCF-7	breast:
7	chr6:37601234..37603729-chr6:37618295..37621074,2	MCF-7	breast:
8	chr6:37601453..37608472-chr6:37609186..37615415,9	K562	blood:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10485031	1.00[CHB][hapmap]
rs10755699	1.00[CHB][hapmap]
rs10947674	1.00[CHD][hapmap]
rs1619327	1.00[CHB][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs1738454	1.00[CHB][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs17639655	1.00[CHB][hapmap]
rs3846877	1.00[CHB][hapmap]
rs3887743	1.00[CHB][hapmap]
rs4236057	1.00[CHB][hapmap]
rs6911875	1.00[CHB][hapmap]
rs6915583	1.00[CHB][hapmap]
rs6922589	1.00[CHB][hapmap]
rs804828	1.00[CHB][hapmap];0.85[LWK][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs804840	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs804841	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380696	1.00[CHB][hapmap];0.85[LWK][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1776447	KIF6	cis	parietal	SCAN
rs1776447	FGD2	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37594000-37615400	Weak transcription	Fetal Brain Female	brain
2	chr6:37598800-37606400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:37598800-37606600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:37599000-37605800	Weak transcription	A549	lung
5	chr6:37599200-37615600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:37599200-37621800	Weak transcription	NHLF	lung
7	chr6:37599800-37603600	Weak transcription	Hela-S3	cervix
8	chr6:37600400-37611400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr6:37600800-37602600	Enhancers	Spleen	Spleen
10	chr6:37601800-37602600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:37602200-37602600	Enhancers	Esophagus	oesophagus
12	chr6:37602200-37602800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:37602200-37603000	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:37602200-37616600	Weak transcription	Right Atrium	heart
15	chr6:37602400-37602600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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