Variant report

Variant	rs6911875
Chromosome Location	chr6:37629638-37629639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37624881..37626670-chr6:37628535..37630431,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10485031	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10755699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1619327	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs1738454	1.00[CHB][hapmap]
rs17639655	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1776447	1.00[CHB][hapmap]
rs3846877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3887743	1.00[CHB][hapmap]
rs4236057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61036221	1.00[ASN][1000 genomes]
rs6915583	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6922589	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72847482	1.00[ASN][1000 genomes]
rs72847491	1.00[ASN][1000 genomes]
rs72847494	1.00[ASN][1000 genomes]
rs72847500	1.00[ASN][1000 genomes]
rs73415421	1.00[ASN][1000 genomes]
rs804828	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs804840	1.00[CHB][hapmap]
rs804841	1.00[CHB][hapmap]
rs9380696	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs9470660	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37618200-37631600	Weak transcription	Gastric	stomach
2	chr6:37620200-37632200	Weak transcription	Right Atrium	heart
3	chr6:37621400-37630800	Weak transcription	Brain Angular Gyrus	brain
4	chr6:37621400-37630800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:37621600-37631400	Weak transcription	Fetal Brain Male	brain
6	chr6:37622200-37630800	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:37622200-37630800	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:37622400-37632400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:37622400-37633000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:37622600-37630600	Weak transcription	NHLF	lung
11	chr6:37625600-37630600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:37626000-37630800	Weak transcription	NH-A	brain
13	chr6:37626000-37633400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:37626000-37635000	Weak transcription	A549	lung
15	chr6:37626400-37631400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:37626600-37631000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:37627000-37631200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr6:37628400-37630400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:37628400-37630600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:37628600-37630000	Strong transcription	Fetal Stomach	stomach
21	chr6:37629000-37631600	Strong transcription	Stomach Smooth Muscle	stomach
22	chr6:37629200-37631000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:37629200-37631000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr6:37629200-37631000	Weak transcription	Brain Substantia Nigra	brain
25	chr6:37629200-37631200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:37629200-37632000	Weak transcription	Pancreas	Pancrea
27	chr6:37629200-37635000	Weak transcription	Aorta	Aorta
28	chr6:37629400-37629800	Strong transcription	Brain Germinal Matrix	brain
29	chr6:37629400-37630000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:37629400-37630800	Weak transcription	Fetal Lung	lung
31	chr6:37629400-37631200	Weak transcription	NHDF-Ad	bronchial
32	chr6:37629400-37646000	Weak transcription	Primary B cells from peripheral blood	blood
33	chr6:37629600-37630400	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:37629600-37631400	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr6:37629600-37641000	Weak transcription	Fetal Brain Female	brain
36	chr6:37629600-37659600	Weak transcription	Ovary	ovary

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