Variant report

Variant	rs17769999
Chromosome Location	chr18:44188699-44188700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10502872	1.00[AFR][1000 genomes]
rs11659770	1.00[ASN][1000 genomes]
rs12454666	1.00[AFR][1000 genomes]
rs3886794	1.00[AFR][1000 genomes]
rs3893061	1.00[ASN][1000 genomes]
rs4121687	1.00[ASN][1000 genomes]
rs4121688	1.00[ASN][1000 genomes]
rs4890339	1.00[ASN][1000 genomes]
rs4890676	1.00[AFR][1000 genomes]
rs4890680	1.00[AFR][1000 genomes]
rs4890693	1.00[ASN][1000 genomes]
rs9949555	1.00[ASN][1000 genomes]
rs9949646	1.00[ASN][1000 genomes]
rs9952976	1.00[ASN][1000 genomes]
rs9955817	1.00[ASN][1000 genomes]
rs9961836	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428355	chr18:44160181-44406285	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44188000-44190800	Enhancers	Dnd41	blood
2	chr18:44188400-44189200	Weak transcription	Fetal Kidney	kidney
3	chr18:44188400-44189200	Enhancers	Thymus	Thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links