Variant report
| Variant | rs1777035 |
|---|---|
| Chromosome Location | chr9:93117315-93117316 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr17:57914932..57916732-chr9:93116621..93119481,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000062716 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10761373 | 0.85[JPT][hapmap] |
| rs10821443 | 0.86[JPT][hapmap] |
| rs10821444 | 0.91[JPT][hapmap] |
| rs10993468 | 0.86[JPT][hapmap] |
| rs10993469 | 0.85[JPT][hapmap] |
| rs1418936 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1581933 | 0.84[EUR][1000 genomes] |
| rs1630044 | 0.81[ASN][1000 genomes] |
| rs1648473 | 0.81[ASN][1000 genomes] |
| rs1754093 | 0.82[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1983962 | 0.81[ASN][1000 genomes] |
| rs2771080 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2771081 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2798038 | 0.82[EUR][1000 genomes] |
| rs2798043 | 0.81[ASN][1000 genomes] |
| rs3748185 | 0.91[JPT][hapmap] |
| rs3748186 | 0.91[JPT][hapmap] |
| rs3748187 | 0.91[JPT][hapmap] |
| rs6479595 | 0.86[JPT][hapmap] |
| rs7870764 | 0.91[JPT][hapmap] |
| rs874977 | 0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9332454 | 0.91[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1051180 | chr9:92869383-93141038 | Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv540169 | chr9:92869383-93141038 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv1041278 | chr9:92965701-93560454 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 4 | nsv528155 | chr9:93106543-93152717 | Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv516680 | chr9:93116944-93138600 | Weak transcription Enhancers Genic enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
