Variant report

Variant	rs17771443
Chromosome Location	chr10:49925611-49925612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11594765	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597850	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011111	0.93[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17698635	0.88[CEU][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17771282	0.88[CEU][hapmap];0.95[AMR][1000 genomes]
rs1871609	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377624	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377625	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838642	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838644	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61838415	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61838425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72787297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912944	0.94[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv895373	chr10:49911737-49933488	Strong transcription Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17771443	WDFY4	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49913000-49930600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:49919800-49927800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:49922000-49933800	Weak transcription	Right Atrium	heart
4	chr10:49923400-49926400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:49923400-49927000	Strong transcription	GM12878-XiMat	blood
6	chr10:49923400-49928000	Weak transcription	Spleen	Spleen
7	chr10:49923400-49928400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr10:49923400-49932400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr10:49923400-49960200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr10:49923600-49927800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:49923600-49939400	Weak transcription	Adipose Nuclei	Adipose
12	chr10:49924600-49930800	Strong transcription	Primary B cells from cord blood	blood
13	chr10:49924600-49933200	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr10:49925200-49928200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr10:49925200-49951600	Strong transcription	Primary B cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links