Variant report

Variant	rs17011111
Chromosome Location	chr10:49914526-49914527
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr10:49914259-49914969	H1-neurons	neurons:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49907771..49909890-chr10:49911982..49914593,2	K562	blood:
2	chr10:49912829..49914750-chr10:49915625..49918084,2	K562	blood:

Variant related genes	Relation type
WDFY4	TF binding region
ENSG00000128815	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11101432	0.81[YRI][hapmap]
rs11101436	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs11594765	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597850	0.83[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12240581	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs12240654	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs12245739	0.85[YRI][hapmap]
rs12254896	0.86[YRI][hapmap]
rs17011119	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs17698635	1.00[CHB][hapmap]
rs17771282	1.00[CHB][hapmap]
rs17771443	0.93[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1871609	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377625	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838642	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838644	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61838425	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069001	0.81[CEU][hapmap]
rs72787297	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1049259	chr10:49901984-49924310	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895373	chr10:49911737-49933488	Strong transcription Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49897000-49918200	Genic enhancers	Primary B cells from peripheral blood	blood
2	chr10:49907400-49917800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:49908200-49922800	Weak transcription	Spleen	Spleen
4	chr10:49910800-49917800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:49911000-49917800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:49911000-49917800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:49912200-49916400	Enhancers	Fetal Heart	heart
8	chr10:49912600-49914800	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr10:49912600-49915200	Weak transcription	Right Ventricle	heart
10	chr10:49913000-49930600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:49913200-49915400	Weak transcription	Left Ventricle	heart
12	chr10:49913200-49915800	Weak transcription	Fetal Lung	lung
13	chr10:49913200-49915800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:49913200-49916400	Weak transcription	Lung	lung
15	chr10:49913400-49916200	Genic enhancers	Primary B cells from cord blood	blood
16	chr10:49913400-49916200	Weak transcription	Placenta	Placenta
17	chr10:49913800-49915200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr10:49913800-49915400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:49914000-49915200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr10:49914000-49915200	Weak transcription	Aorta	Aorta
21	chr10:49914000-49915200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr10:49914000-49915400	Weak transcription	GM12878-XiMat	blood
23	chr10:49914000-49916200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:49914200-49922600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:49914400-49915400	Weak transcription	Fetal Muscle Leg	muscle

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