Variant report

Variant	rs7069001
Chromosome Location	chr10:49927163-49927164
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49926635..49928509-chr10:49930502..49932684,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10745282	0.86[ASN][1000 genomes]
rs11101434	0.86[ASN][1000 genomes]
rs12767182	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs17011106	0.81[CHD][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs17011111	0.81[CEU][hapmap]
rs17011115	0.81[CHD][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs17698635	0.89[CEU][hapmap]
rs17771282	0.89[CEU][hapmap]
rs1871608	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1871609	0.83[CEU][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes]
rs1904601	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2377623	0.81[CHD][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs2377624	0.83[CEU][hapmap]
rs2377625	0.94[ASW][hapmap];0.83[CEU][hapmap];0.80[LWK][hapmap];0.82[MKK][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs4255465	0.81[CHD][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs4838642	0.82[CEU][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes]
rs4838643	0.85[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4838644	0.82[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes]
rs7069023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7896204	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7912897	0.86[ASN][1000 genomes]
rs7912944	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv895373	chr10:49911737-49933488	Strong transcription Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49913000-49930600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:49919800-49927800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:49922000-49933800	Weak transcription	Right Atrium	heart
4	chr10:49923400-49928000	Weak transcription	Spleen	Spleen
5	chr10:49923400-49928400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:49923400-49932400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr10:49923400-49960200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:49923600-49927800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:49923600-49939400	Weak transcription	Adipose Nuclei	Adipose
10	chr10:49924600-49930800	Strong transcription	Primary B cells from cord blood	blood
11	chr10:49924600-49933200	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr10:49925200-49928200	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr10:49925200-49951600	Strong transcription	Primary B cells from peripheral blood	blood
14	chr10:49926400-49953600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:49927000-49928000	Weak transcription	GM12878-XiMat	blood
16	chr10:49927000-49929200	Weak transcription	Rectal Mucosa Donor 29	rectum

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