Variant report

Variant	rs7896204
Chromosome Location	chr10:49913939-49913940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr10:49913845-49913992	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49907771..49909890-chr10:49911982..49914593,2	K562	blood:
2	chr10:49912829..49914750-chr10:49915625..49918084,2	K562	blood:

Variant related genes	Relation type
WDFY4	TF binding region
ENSG00000128815	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10745282	0.91[ASN][1000 genomes]
rs11101434	0.91[ASN][1000 genomes]
rs12767182	0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs17011106	0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs17011115	0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs1871608	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1871609	0.87[YRI][hapmap];0.82[AFR][1000 genomes]
rs1904601	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377623	0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs2377625	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs4255465	0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs4838642	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs4838643	0.87[ASN][1000 genomes]
rs4838644	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs7069001	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7069023	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7909344	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs7912897	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1049259	chr10:49901984-49924310	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895373	chr10:49911737-49933488	Strong transcription Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49897000-49918200	Genic enhancers	Primary B cells from peripheral blood	blood
2	chr10:49907400-49917800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:49908200-49922800	Weak transcription	Spleen	Spleen
4	chr10:49910000-49914000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:49910800-49917800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:49911000-49917800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:49911000-49917800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:49911400-49914200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:49912200-49916400	Enhancers	Fetal Heart	heart
10	chr10:49912400-49914000	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr10:49912600-49914800	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr10:49912600-49915200	Weak transcription	Right Ventricle	heart
13	chr10:49913000-49914000	Enhancers	GM12878-XiMat	blood
14	chr10:49913000-49930600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:49913200-49914400	Enhancers	Fetal Muscle Leg	muscle
16	chr10:49913200-49915400	Weak transcription	Left Ventricle	heart
17	chr10:49913200-49915800	Weak transcription	Fetal Lung	lung
18	chr10:49913200-49915800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr10:49913200-49916400	Weak transcription	Lung	lung
20	chr10:49913400-49914000	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr10:49913400-49916200	Genic enhancers	Primary B cells from cord blood	blood
22	chr10:49913400-49916200	Weak transcription	Placenta	Placenta
23	chr10:49913800-49914000	Enhancers	Aorta	Aorta
24	chr10:49913800-49915200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr10:49913800-49915400	Weak transcription	Rectal Mucosa Donor 31	rectum

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