Variant report

Variant	rs4255465
Chromosome Location	chr10:49910758-49910759
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10745282	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101434	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12767182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1871608	0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1904601	0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2377623	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838643	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7069001	0.81[CHD][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs7069023	0.82[ASN][1000 genomes]
rs7073067	0.87[YRI][hapmap];0.83[AFR][1000 genomes]
rs7896204	0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs7912897	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1049259	chr10:49901984-49924310	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49897000-49918200	Genic enhancers	Primary B cells from peripheral blood	blood
2	chr10:49903800-49911400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr10:49907400-49917800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:49907600-49911800	Weak transcription	Left Ventricle	heart
5	chr10:49907600-49912200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:49907800-49910800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:49907800-49912000	Weak transcription	Right Ventricle	heart
8	chr10:49908200-49911000	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr10:49908200-49922800	Weak transcription	Spleen	Spleen
10	chr10:49909200-49910800	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr10:49909400-49910800	Enhancers	Fetal Thymus	thymus
12	chr10:49909400-49911000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:49909400-49911400	Enhancers	Primary B cells from cord blood	blood
14	chr10:49909600-49911000	Enhancers	Primary hematopoietic stem cells	blood
15	chr10:49909600-49912000	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr10:49909600-49912200	Enhancers	Fetal Stomach	stomach
17	chr10:49909800-49912400	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr10:49910000-49914000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr10:49910200-49911000	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr10:49910200-49913200	Enhancers	Fetal Lung	lung
21	chr10:49910400-49911000	Weak transcription	GM12878-XiMat	blood
22	chr10:49910400-49911200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr10:49910400-49911200	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr10:49910600-49910800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr10:49910600-49912200	Weak transcription	Esophagus	oesophagus
26	chr10:49910600-49912200	Weak transcription	Fetal Heart	heart

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