Variant report

Variant	rs7073067
Chromosome Location	chr10:49924031-49924032
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10745282	0.85[AFR][1000 genomes]
rs11101434	0.85[AFR][1000 genomes]
rs11101465	1.00[JPT][hapmap]
rs2377623	0.87[YRI][hapmap];0.83[AFR][1000 genomes]
rs4255465	0.87[YRI][hapmap];0.83[AFR][1000 genomes]
rs7912897	0.83[AFR][1000 genomes]
rs7916176	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1049259	chr10:49901984-49924310	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895373	chr10:49911737-49933488	Strong transcription Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49913000-49930600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:49919800-49927800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:49922000-49933800	Weak transcription	Right Atrium	heart
4	chr10:49923200-49924200	Strong transcription	Primary B cells from cord blood	blood
5	chr10:49923200-49925200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr10:49923400-49924200	Strong transcription	Primary B cells from peripheral blood	blood
7	chr10:49923400-49926400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:49923400-49927000	Strong transcription	GM12878-XiMat	blood
9	chr10:49923400-49928000	Weak transcription	Spleen	Spleen
10	chr10:49923400-49928400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr10:49923400-49932400	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr10:49923400-49960200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:49923600-49924600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr10:49923600-49927800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:49923600-49939400	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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