Variant report

Variant	rs7916176
Chromosome Location	chr10:50049233-50049234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11101465	1.00[JPT][hapmap]
rs17011252	0.82[ASW][hapmap];0.82[LWK][hapmap];0.84[AFR][1000 genomes]
rs17011299	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17011305	0.83[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17011340	0.84[ASW][hapmap];0.83[LWK][hapmap];0.88[MKK][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17011346	0.84[ASW][hapmap];0.89[AMR][1000 genomes]
rs41390646	0.84[ASW][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.83[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs57495630	0.89[AFR][1000 genomes]
rs59424280	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7073067	1.00[JPT][hapmap]
rs73310070	0.89[AFR][1000 genomes]
rs73312030	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73312042	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73312044	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73312052	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73312067	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73312070	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73312081	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50013600-50061000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:50015200-50063400	Strong transcription	Primary B cells from cord blood	blood
3	chr10:50016200-50063000	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr10:50016200-50063000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr10:50016600-50062400	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:50020000-50052000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:50025000-50062800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:50028600-50070200	Strong transcription	Primary B cells from peripheral blood	blood
9	chr10:50029000-50051400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:50029200-50052000	Strong transcription	Primary hematopoietic stem cells	blood
11	chr10:50041600-50055400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:50042200-50059200	Weak transcription	Primary T cells from cord blood	blood
13	chr10:50044600-50057200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:50045400-50050200	Weak transcription	Spleen	Spleen
15	chr10:50047200-50049600	Weak transcription	Lung	lung
16	chr10:50047200-50052400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr10:50047200-50054200	Weak transcription	Right Atrium	heart
18	chr10:50048600-50051400	Strong transcription	GM12878-XiMat	blood
19	chr10:50048600-50054600	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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