Variant report

Variant	rs17011340
Chromosome Location	chr10:50086242-50086243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17011252	1.00[ASW][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs17011299	0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17011305	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17011346	1.00[ASW][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41390646	1.00[ASW][hapmap];0.87[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57495630	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs59424280	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73310070	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73312030	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73312042	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73312044	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73312052	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73312067	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73312070	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73312081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7916176	0.84[ASW][hapmap];0.83[LWK][hapmap];0.88[MKK][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50072200-50087800	Weak transcription	Gastric	stomach
2	chr10:50072800-50126200	Strong transcription	Primary B cells from peripheral blood	blood
3	chr10:50074200-50107000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr10:50074600-50093200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:50074600-50129600	Strong transcription	Primary B cells from cord blood	blood
6	chr10:50075200-50093600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr10:50075400-50126000	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr10:50076600-50092000	Weak transcription	Primary T cells from cord blood	blood
9	chr10:50079400-50088400	Strong transcription	GM12878-XiMat	blood
10	chr10:50080200-50088400	Strong transcription	Primary hematopoietic stem cells	blood
11	chr10:50081200-50090800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:50081400-50089200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:50081600-50091200	Strong transcription	Spleen	Spleen
14	chr10:50083600-50086800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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