Variant report

Variant	rs41390646
Chromosome Location	chr10:50080966-50080967
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17011252	1.00[ASW][hapmap];0.86[LWK][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs17011299	0.82[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17011305	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17011340	1.00[ASW][hapmap];0.87[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17011346	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs57495630	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs59424280	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73310070	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73312030	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73312042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73312044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73312052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73312067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73312070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73312081	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7916176	0.84[ASW][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.83[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50054400-50081600	Weak transcription	Spleen	Spleen
2	chr10:50072200-50087800	Weak transcription	Gastric	stomach
3	chr10:50072800-50126200	Strong transcription	Primary B cells from peripheral blood	blood
4	chr10:50074200-50107000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr10:50074600-50093200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr10:50074600-50129600	Strong transcription	Primary B cells from cord blood	blood
7	chr10:50075200-50093600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:50075400-50126000	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr10:50076600-50092000	Weak transcription	Primary T cells from cord blood	blood
10	chr10:50077800-50081200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:50079000-50081800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:50079400-50081400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:50079400-50088400	Strong transcription	GM12878-XiMat	blood
14	chr10:50080200-50088400	Strong transcription	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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