Variant report

Variant	rs17011106
Chromosome Location	chr10:49911701-49911702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49905425..49907287-chr10:49911171..49913733,2	MCF-7	breast:
2	chr10:49906264..49908604-chr10:49911628..49913491,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10745282	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101434	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12767182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011115	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1871608	0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1904601	0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2377623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4255465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4838643	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7069001	0.81[CHD][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs7069023	0.82[ASN][1000 genomes]
rs7896204	0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs7909344	0.88[YRI][hapmap]
rs7912897	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1049259	chr10:49901984-49924310	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49897000-49918200	Genic enhancers	Primary B cells from peripheral blood	blood
2	chr10:49907400-49917800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:49907600-49911800	Weak transcription	Left Ventricle	heart
4	chr10:49907600-49912200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:49907800-49912000	Weak transcription	Right Ventricle	heart
6	chr10:49908200-49922800	Weak transcription	Spleen	Spleen
7	chr10:49909600-49912000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr10:49909600-49912200	Enhancers	Fetal Stomach	stomach
9	chr10:49909800-49912400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr10:49910000-49914000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr10:49910200-49913200	Enhancers	Fetal Lung	lung
12	chr10:49910600-49912200	Weak transcription	Esophagus	oesophagus
13	chr10:49910600-49912200	Weak transcription	Fetal Heart	heart
14	chr10:49910800-49912200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr10:49910800-49917800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:49911000-49911800	Strong transcription	GM12878-XiMat	blood
17	chr10:49911000-49917800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr10:49911000-49917800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:49911200-49912000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr10:49911400-49912000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr10:49911400-49913400	Enhancers	Placenta	Placenta
22	chr10:49911400-49913800	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr10:49911400-49914200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:49911600-49912000	Weak transcription	Lung	lung
25	chr10:49911600-49912400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr10:49911600-49913400	Strong transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links