Variant report

Variant	rs11101436
Chromosome Location	chr10:49919567-49919568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49918859..49921517-chr10:49927615..49930107,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11101432	1.00[CEU][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12240581	1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12240654	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12245739	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12254896	1.00[CEU][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12266115	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12267792	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17011056	0.85[EUR][1000 genomes]
rs17011111	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs17011119	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2377624	0.91[LWK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs4838639	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs55668791	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7912944	0.91[LWK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9971048	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1049259	chr10:49901984-49924310	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895373	chr10:49911737-49933488	Strong transcription Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv523003	chr10:49917061-49920608	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49908200-49922800	Weak transcription	Spleen	Spleen
2	chr10:49913000-49930600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:49914200-49922600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:49915400-49921600	Strong transcription	GM12878-XiMat	blood
5	chr10:49916800-49920400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:49916800-49921600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:49916800-49921600	Weak transcription	Right Atrium	heart
8	chr10:49917600-49920200	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr10:49917600-49921200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr10:49917800-49919800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:49917800-49920800	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr10:49917800-49921400	Strong transcription	Primary B cells from cord blood	blood
13	chr10:49917800-49921400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr10:49917800-49921600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:49917800-49921800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:49917800-49922400	Strong transcription	Primary hematopoietic stem cells	blood
17	chr10:49918200-49922800	Strong transcription	Primary B cells from peripheral blood	blood
18	chr10:49918400-49919800	Enhancers	Fetal Brain Male	brain
19	chr10:49918400-49922400	Enhancers	Left Ventricle	heart
20	chr10:49918800-49919600	Enhancers	Fetal Muscle Trunk	muscle
21	chr10:49918800-49919600	Enhancers	Right Ventricle	heart
22	chr10:49919400-49919800	Enhancers	Fetal Heart	heart
23	chr10:49919400-49919800	Bivalent Enhancer	Fetal Stomach	stomach

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