Variant report

Variant	rs55668791
Chromosome Location	chr10:49909780-49909781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49907771..49909890-chr10:49911982..49914593,2	K562	blood:
2	chr10:49905321..49907163-chr10:49908758..49910587,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11101432	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11101436	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12240581	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12240654	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12245739	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12254896	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12266115	1.00[EUR][1000 genomes]
rs12267792	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17011056	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17011119	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4838639	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9971048	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1049259	chr10:49901984-49924310	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49897000-49918200	Genic enhancers	Primary B cells from peripheral blood	blood
2	chr10:49903800-49911400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr10:49906600-49910000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr10:49906800-49909800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr10:49907200-49910200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:49907400-49917800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:49907600-49911800	Weak transcription	Left Ventricle	heart
8	chr10:49907600-49912200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:49907800-49910000	Weak transcription	Fetal Heart	heart
10	chr10:49907800-49910800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:49907800-49912000	Weak transcription	Right Ventricle	heart
12	chr10:49908200-49911000	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr10:49908200-49922800	Weak transcription	Spleen	Spleen
14	chr10:49909200-49910200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr10:49909200-49910800	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr10:49909400-49910800	Enhancers	Fetal Thymus	thymus
17	chr10:49909400-49911000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:49909400-49911400	Enhancers	Primary B cells from cord blood	blood
19	chr10:49909600-49909800	Flanking Active TSS	GM12878-XiMat	blood
20	chr10:49909600-49911000	Enhancers	Primary hematopoietic stem cells	blood
21	chr10:49909600-49912000	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr10:49909600-49912200	Enhancers	Fetal Stomach	stomach

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