Variant report

Variant	rs12267792
Chromosome Location	chr10:49921749-49921750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11101432	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11101436	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12240581	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12240654	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12245739	1.00[CEU][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12254896	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12266115	1.00[EUR][1000 genomes]
rs17011056	0.85[EUR][1000 genomes]
rs17011119	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4838639	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs55668791	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9971048	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1049259	chr10:49901984-49924310	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895373	chr10:49911737-49933488	Strong transcription Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49908200-49922800	Weak transcription	Spleen	Spleen
2	chr10:49913000-49930600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:49914200-49922600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:49917800-49921800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:49917800-49922400	Strong transcription	Primary hematopoietic stem cells	blood
6	chr10:49918200-49922800	Strong transcription	Primary B cells from peripheral blood	blood
7	chr10:49918400-49922400	Enhancers	Left Ventricle	heart
8	chr10:49919600-49922000	Weak transcription	Right Ventricle	heart
9	chr10:49919800-49927800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:49920400-49922000	Enhancers	Fetal Heart	heart
11	chr10:49920600-49921800	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr10:49921000-49923600	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr10:49921400-49923000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr10:49921400-49923200	Genic enhancers	Primary B cells from cord blood	blood
15	chr10:49921400-49923400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
16	chr10:49921600-49922000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:49921600-49922000	Enhancers	Right Atrium	heart
18	chr10:49921600-49922800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:49921600-49923400	ZNF genes & repeats	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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