Variant report

Variant	rs17774361
Chromosome Location	chr15:74111440-74111441
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17774247	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28515201	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2899823	0.93[EUR][1000 genomes]
rs72743365	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72743366	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs746655	0.90[EUR][1000 genomes]
rs8032652	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs921535	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74109400-74111600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
2	chr15:74109600-74111600	Enhancers	Fetal Muscle Leg	muscle
3	chr15:74111000-74114200	Weak transcription	Fetal Brain Male	brain
4	chr15:74111000-74119200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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