Variant report

Variant	rs2899823
Chromosome Location	chr15:74106011-74106012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17774247	0.99[EUR][1000 genomes]
rs17774361	0.93[EUR][1000 genomes]
rs28515201	0.93[EUR][1000 genomes]
rs72743365	0.99[EUR][1000 genomes]
rs72743366	0.99[EUR][1000 genomes]
rs746655	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8032652	0.98[EUR][1000 genomes]
rs921535	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74097800-74110200	Weak transcription	Brain Germinal Matrix	brain
2	chr15:74104000-74106800	Enhancers	Fetal Muscle Trunk	muscle
3	chr15:74104000-74107400	Enhancers	Fetal Muscle Leg	muscle
4	chr15:74104800-74106200	Enhancers	Fetal Brain Female	brain
5	chr15:74104800-74107000	Enhancers	Fetal Brain Male	brain
6	chr15:74105200-74106800	Enhancers	Fetal Stomach	stomach
7	chr15:74105600-74109800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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