Variant report

Variant	rs17778707
Chromosome Location	chr3:99508328-99508329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:99497311..99499461-chr3:99505852..99508651,2	K562	blood:
2	chr3:99363825..99364826-chr3:99507909..99508677,3	MCF-7	breast:
3	chr3:99503820..99505531-chr3:99508281..99509864,2	MCF-7	breast:
4	chr3:99507821..99508448-chr3:99526438..99527212,2	MCF-7	breast:
5	chr3:98833374..98834517-chr3:99507971..99508723,4	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs15890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17313676	1.00[AMR][1000 genomes]
rs17338576	1.00[AMR][1000 genomes]
rs17397949	1.00[AMR][1000 genomes]
rs17778804	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17779605	1.00[AMR][1000 genomes]
rs2035400	1.00[AMR][1000 genomes]
rs36005744	1.00[AMR][1000 genomes]
rs6762809	1.00[AMR][1000 genomes]
rs6803576	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6807615	1.00[AMR][1000 genomes]
rs7611313	1.00[AMR][1000 genomes]
rs7619738	1.00[AMR][1000 genomes]
rs7626310	1.00[AMR][1000 genomes]
rs7646221	1.00[AMR][1000 genomes]
rs9756455	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9757638	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99492000-99517600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:99494200-99513600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:99496000-99513000	Weak transcription	NHEK	skin
4	chr3:99499400-99509000	Weak transcription	Aorta	Aorta
5	chr3:99501000-99513000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:99501400-99509000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:99502400-99508800	Weak transcription	Adipose Nuclei	Adipose
8	chr3:99502600-99518200	Weak transcription	HSMMtube	muscle
9	chr3:99502800-99518400	Weak transcription	NH-A	brain
10	chr3:99503600-99509000	Weak transcription	HUVEC	blood vessel
11	chr3:99504600-99513000	Weak transcription	HSMM	muscle
12	chr3:99505800-99513200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:99507200-99508400	Enhancers	NHDF-Ad	bronchial
14	chr3:99507400-99508600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:99507600-99508400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:99507600-99508400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr3:99507800-99508400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:99508000-99508400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:99508000-99508400	Enhancers	Rectal Smooth Muscle	rectum
20	chr3:99508000-99509000	Weak transcription	NHLF	lung
21	chr3:99508200-99508600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr3:99508200-99508800	Weak transcription	Osteobl	bone
23	chr3:99508200-99509200	Enhancers	Fetal Lung	lung

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