Variant report

Variant	rs17338576
Chromosome Location	chr3:99611158-99611159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:99609266..99611636-chr3:99613275..99615005,3	K562	blood:
2	chr3:99596926..99599142-chr3:99610230..99612159,2	K562	blood:
3	chr3:99610779..99612838-chr3:99701671..99703484,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs15890	1.00[AMR][1000 genomes]
rs17313676	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17314245	1.00[EUR][1000 genomes]
rs17314280	1.00[EUR][1000 genomes]
rs17314977	1.00[EUR][1000 genomes]
rs17392822	1.00[EUR][1000 genomes]
rs17393080	1.00[EUR][1000 genomes]
rs17397949	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17778707	1.00[AMR][1000 genomes]
rs17778804	1.00[AMR][1000 genomes]
rs17779605	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2035400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36005744	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6762809	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6762871	1.00[EUR][1000 genomes]
rs6781780	1.00[EUR][1000 genomes]
rs6784150	1.00[EUR][1000 genomes]
rs6788807	1.00[EUR][1000 genomes]
rs6790187	1.00[EUR][1000 genomes]
rs6794130	1.00[EUR][1000 genomes]
rs6794365	1.00[EUR][1000 genomes]
rs6803576	1.00[AMR][1000 genomes]
rs6805703	0.89[AFR][1000 genomes]
rs6807137	1.00[EUR][1000 genomes]
rs6807615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6808420	0.89[AFR][1000 genomes]
rs7611313	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7612083	0.89[AFR][1000 genomes]
rs7612089	0.89[AFR][1000 genomes]
rs7619738	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7625813	0.89[AFR][1000 genomes]
rs7626214	0.89[AFR][1000 genomes]
rs7626310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7628458	1.00[EUR][1000 genomes]
rs7646221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7648943	1.00[EUR][1000 genomes]
rs766777	1.00[EUR][1000 genomes]
rs9756455	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99595600-99612800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr3:99596600-99614200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:99597200-99614200	Weak transcription	HMEC	breast
4	chr3:99600800-99638600	Weak transcription	Left Ventricle	heart
5	chr3:99603600-99611200	Weak transcription	Psoas Muscle	Psoas
6	chr3:99604000-99612600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr3:99604000-99613200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:99604000-99614400	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr3:99604400-99614000	Weak transcription	HUVEC	blood vessel
10	chr3:99604600-99648200	Weak transcription	Primary T cells from cord blood	blood
11	chr3:99605000-99613600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:99605000-99614600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:99605200-99613800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:99609800-99611600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:99610200-99611400	Weak transcription	Gastric	stomach
16	chr3:99610200-99613600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr3:99610200-99613800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr3:99610200-99614200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr3:99610200-99614400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr3:99610200-99614600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr3:99610200-99614600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr3:99610200-99614600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr3:99610400-99611600	Enhancers	NHLF	lung
24	chr3:99610800-99611400	Enhancers	NHDF-Ad	bronchial
25	chr3:99611000-99611200	Enhancers	HSMM	muscle
26	chr3:99611000-99611600	Enhancers	HepG2	liver

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