Variant report

Variant rs17780584
Chromosome Location chr5:58617539-58617540
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:35 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:58612800-58627200 Weak transcription Aorta Aorta
2 chr5:58613600-58618000 Weak transcription Small Intestine intestine
3 chr5:58613600-58618600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr5:58613600-58618600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
5 chr5:58613600-58626600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr5:58613600-58628600 Weak transcription Gastric stomach
7 chr5:58613800-58618000 Weak transcription Fetal Intestine Large intestine
8 chr5:58613800-58619800 Weak transcription Psoas Muscle Psoas
9 chr5:58613800-58622600 Weak transcription Fetal Brain Female brain
10 chr5:58614000-58624600 Weak transcription Fetal Stomach stomach
11 chr5:58614200-58618400 Weak transcription Fetal Intestine Small intestine
12 chr5:58614400-58618000 Weak transcription Stomach Mucosa stomach
13 chr5:58616200-58618000 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr5:58616200-58618800 Weak transcription Fetal Brain Male brain
15 chr5:58616200-58623000 Weak transcription Fetal Muscle Leg muscle
16 chr5:58616200-58624600 Weak transcription Brain Inferior Temporal Lobe brain
17 chr5:58616800-58618800 Enhancers Skeletal Muscle Female skeletal muscle
18 chr5:58616800-58619000 Enhancers Duodenum Mucosa Duodenum
19 chr5:58616800-58619200 Enhancers Fetal Kidney kidney
20 chr5:58616800-58619200 Enhancers Rectal Mucosa Donor 31 rectum
21 chr5:58616800-58621600 Enhancers Fetal Heart heart
22 chr5:58617000-58617600 Enhancers Left Ventricle heart
23 chr5:58617000-58617600 Enhancers Right Ventricle heart
24 chr5:58617000-58618600 Enhancers Rectal Mucosa Donor 29 rectum
25 chr5:58617000-58618600 Enhancers Right Atrium heart
26 chr5:58617000-58618800 Enhancers Rectal Smooth Muscle rectum
27 chr5:58617000-58618800 Enhancers Sigmoid Colon Sigmoid Colon
28 chr5:58617000-58619200 Enhancers Duodenum Smooth Muscle Duodenum
29 chr5:58617000-58620200 Enhancers Colon Smooth Muscle Colon
30 chr5:58617200-58622600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
31 chr5:58617400-58617800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
32 chr5:58617400-58618000 Enhancers Pancreatic Islets Pancreatic Islet
33 chr5:58617400-58618600 Enhancers Fetal Lung lung
34 chr5:58617400-58619200 Enhancers Hela-S3 cervix
35 chr5:58617400-58620000 Enhancers A549 lung

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