Variant report

Variant	rs2194210
Chromosome Location	chr5:58606494-58606495
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:58605150..58607520-chr5:58610737..58612919,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10036406	0.89[CEU][hapmap]
rs10038599	0.80[CEU][hapmap]
rs10055446	0.87[CEU][hapmap]
rs10060200	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10079396	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10079614	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10079932	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13328175	0.88[CEU][hapmap]
rs13354210	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17528285	0.86[CEU][hapmap]
rs17528634	0.89[CEU][hapmap]
rs17724250	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17780213	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17780584	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17780740	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17780836	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17780860	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1824159	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2044419	0.89[EUR][1000 genomes]
rs56183128	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57516309	0.85[EUR][1000 genomes]
rs72765993	0.85[EUR][1000 genomes]
rs72767710	0.89[EUR][1000 genomes]
rs72767722	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9292201	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598252	chr5:58487764-58618889	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1023628	chr5:58557950-58757438	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1030117	chr5:58587672-58637179	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58593000-58611200	Weak transcription	Right Ventricle	heart
2	chr5:58593200-58612600	Weak transcription	Fetal Lung	lung
3	chr5:58593200-58613400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr5:58594000-58612800	Weak transcription	Stomach Mucosa	stomach
5	chr5:58595600-58609000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr5:58597000-58607600	Weak transcription	Psoas Muscle	Psoas
7	chr5:58598000-58607800	Weak transcription	Fetal Heart	heart
8	chr5:58598000-58608600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr5:58598000-58612600	Weak transcription	Fetal Intestine Large	intestine
10	chr5:58598000-58612800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:58598000-58612800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:58602400-58606600	Weak transcription	Hela-S3	cervix
13	chr5:58604800-58607000	Genic enhancers	A549	lung
14	chr5:58604800-58607800	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr5:58605000-58606600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr5:58605000-58606800	Weak transcription	Fetal Muscle Leg	muscle
17	chr5:58605000-58612800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:58605200-58606600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr5:58605200-58606800	Weak transcription	Colon Smooth Muscle	Colon
20	chr5:58605200-58612800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr5:58605200-58613000	Weak transcription	Fetal Brain Female	brain
22	chr5:58605600-58611200	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr5:58605800-58612400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr5:58606000-58606600	Weak transcription	Fetal Intestine Small	intestine
25	chr5:58606000-58607000	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr5:58606000-58612600	Weak transcription	Fetal Stomach	stomach

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