Variant report
| Variant | rs17780617 |
|---|---|
| Chromosome Location | chr4:3110378-3110379 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:3078600-3113800 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 2 | chr4:3080000-3117800 | Weak transcription | Small Intestine | intestine |
| 3 | chr4:3088200-3164200 | Strong transcription | Primary monocytes fromperipheralblood | blood |
| 4 | chr4:3094400-3123400 | Strong transcription | Primary hematopoietic stem cells short term culture | blood |
| 5 | chr4:3097200-3143400 | Strong transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 6 | chr4:3097200-3162200 | Strong transcription | HUES64 Cell Line | embryonic stem cell |
| 7 | chr4:3097400-3163800 | Strong transcription | HUES48 Cell Line | embryonic stem cell |
| 8 | chr4:3098000-3162600 | Strong transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 9 | chr4:3099800-3114400 | Strong transcription | HUES6 Cell Line | embryonic stem cell |
| 10 | chr4:3100000-3110400 | Strong transcription | Primary hematopoietic stem cells | blood |
| 11 | chr4:3100000-3159400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 12 | chr4:3100400-3112000 | Strong transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 13 | chr4:3101000-3111800 | Strong transcription | Sigmoid Colon | Sigmoid Colon |
| 14 | chr4:3101000-3113000 | Strong transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 15 | chr4:3101000-3113800 | Strong transcription | Primary mononuclear cells fromperipheralblood | Blood |
| 16 | chr4:3101000-3120600 | Strong transcription | Fetal Stomach | stomach |
| 17 | chr4:3101000-3122600 | Strong transcription | Primary T helper cells fromperipheralblood | blood |
| 18 | chr4:3101000-3124200 | Strong transcription | Fetal Intestine Large | intestine |
| 19 | chr4:3101000-3124400 | Strong transcription | Thymus | Thymus |
| 20 | chr4:3101600-3124200 | Strong transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 21 | chr4:3101800-3114400 | Strong transcription | Breast Myoepithelial Primary Cells | Breast |
| 22 | chr4:3104800-3115200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 23 | chr4:3105400-3123800 | Strong transcription | Rectal Mucosa Donor 29 | rectum |
| 24 | chr4:3105400-3124800 | Strong transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
| 25 | chr4:3105800-3110400 | Strong transcription | Spleen | Spleen |
| 26 | chr4:3105800-3113200 | Strong transcription | iPS-18 Cell Line | embryonic stem cell |
| 27 | chr4:3105800-3115400 | Strong transcription | H1 Cell Line | embryonic stem cell |
| 28 | chr4:3105800-3121400 | Strong transcription | Primary T cells effector/memory enriched fromperipheralblood | blood |
| 29 | chr4:3106200-3111000 | Strong transcription | Lung | lung |
| 30 | chr4:3106200-3113400 | Strong transcription | Fetal Muscle Leg | muscle |
| 31 | chr4:3106400-3111800 | Strong transcription | Brain Germinal Matrix | brain |
| 32 | chr4:3106400-3112400 | Strong transcription | Brain Angular Gyrus | brain |
| 33 | chr4:3106400-3115400 | Strong transcription | Fetal Lung | lung |
| 34 | chr4:3106400-3123400 | Strong transcription | Primary T cells from cord blood | blood |
| 35 | chr4:3106400-3123800 | Strong transcription | Fetal Thymus | thymus |
| 36 | chr4:3106400-3145000 | Strong transcription | Dnd41 | blood |
| 37 | chr4:3106600-3115600 | Strong transcription | Fetal Brain Female | brain |
| 38 | chr4:3106800-3125200 | Strong transcription | Primary B cells from cord blood | blood |
| 39 | chr4:3107000-3114200 | Strong transcription | HepG2 | liver |
| 40 | chr4:3108000-3113200 | Weak transcription | Gastric | stomach |
| 41 | chr4:3108200-3110400 | Genic enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 42 | chr4:3108200-3110400 | Enhancers | Adipose Nuclei | Adipose |
| 43 | chr4:3108200-3110400 | Genic enhancers | Brain Anterior Caudate | brain |
| 44 | chr4:3108200-3110800 | Genic enhancers | IMR90 fetal lung fibroblasts Cell Line | lung |
| 45 | chr4:3108200-3110800 | Genic enhancers | Osteobl | bone |
| 46 | chr4:3108400-3119600 | Strong transcription | Primary T helper 17 cells PMA-I stimulated | -- |
| 47 | chr4:3108400-3123000 | Strong transcription | Primary T helper naive cells fromperipheralblood | blood |
| 48 | chr4:3108600-3110400 | Genic enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 49 | chr4:3108600-3110400 | Strong transcription | HMEC | breast |
| 50 | chr4:3108600-3115200 | Strong transcription | iPS-20b Cell Line | embryonic stem cell |
