Variant report

Variant	rs17782374
Chromosome Location	chr5:58663831-58663832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17781354	0.85[JPT][hapmap]
rs17782238	1.00[CHD][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs17783275	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023628	chr5:58557950-58757438	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1030716	chr5:58636116-58718362	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032732	chr5:58637179-58689010	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1022160	chr5:58645805-58689010	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv881704	chr5:58653383-58675538	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58653000-58669400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr5:58654400-58667000	Weak transcription	Fetal Intestine Large	intestine
3	chr5:58654600-58665400	Weak transcription	Fetal Muscle Leg	muscle
4	chr5:58654800-58665800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr5:58656200-58665400	Weak transcription	Psoas Muscle	Psoas
6	chr5:58659800-58665800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:58659800-58667200	Weak transcription	Fetal Intestine Small	intestine
8	chr5:58660600-58669200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:58662200-58664000	Enhancers	Rectal Smooth Muscle	rectum
10	chr5:58662800-58664000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:58662800-58664000	Enhancers	Hela-S3	cervix
12	chr5:58663000-58664000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr5:58663400-58664000	Enhancers	Brain Cingulate Gyrus	brain
14	chr5:58663600-58664000	Enhancers	Brain Angular Gyrus	brain
15	chr5:58663600-58664000	Enhancers	HUVEC	blood vessel
16	chr5:58663600-58664200	Enhancers	Fetal Kidney	kidney
17	chr5:58663800-58665200	Weak transcription	Colon Smooth Muscle	Colon
18	chr5:58663800-58665600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr5:58663800-58666400	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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