Variant report

Variant	rs17787417
Chromosome Location	chr11:46088828-46088829
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46088490..46090465-chr11:46137712..46140250,2	K562	blood:
2	chr11:46081977..46085173-chr11:46088425..46091893,3	K562	blood:
3	chr11:46088023..46090704-chr11:46099772..46102518,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254653	Chromatin interaction

rs_ID	r²[population]
rs61882478	1.00[AFR][1000 genomes]
rs61882501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61882503	1.00[AFR][1000 genomes]
rs61882506	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61882549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61884127	1.00[AFR][1000 genomes]
rs61884130	1.00[AFR][1000 genomes]

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46039400-46096800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr11:46062000-46100800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:46063200-46119800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr11:46063600-46098000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr11:46063600-46104600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:46064000-46097600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr11:46068800-46096800	Weak transcription	Fetal Thymus	thymus
8	chr11:46070800-46096800	Weak transcription	A549	lung
9	chr11:46071200-46097800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr11:46071400-46094600	Weak transcription	Fetal Intestine Small	intestine
11	chr11:46071400-46097800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:46071400-46114800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:46071400-46118800	Weak transcription	Lung	lung
14	chr11:46071800-46093800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr11:46072000-46089200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:46072000-46092800	Weak transcription	Esophagus	oesophagus
17	chr11:46072000-46093800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:46072000-46093800	Weak transcription	Ovary	ovary
19	chr11:46072000-46093800	Weak transcription	Right Ventricle	heart
20	chr11:46072000-46093800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr11:46072000-46097600	Weak transcription	Brain Hippocampus Middle	brain
22	chr11:46072000-46100800	Weak transcription	Thymus	Thymus
23	chr11:46072000-46101000	Weak transcription	Brain Anterior Caudate	brain
24	chr11:46072000-46119400	Weak transcription	Brain Angular Gyrus	brain
25	chr11:46072200-46089000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr11:46072200-46095200	Weak transcription	GM12878-XiMat	blood
27	chr11:46072600-46096800	Weak transcription	NH-A	brain
28	chr11:46072600-46097600	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr11:46072600-46100800	Weak transcription	Placenta	Placenta
30	chr11:46072800-46096800	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr11:46073200-46101000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr11:46073200-46101800	Weak transcription	Fetal Stomach	stomach
33	chr11:46073400-46089400	Weak transcription	Fetal Kidney	kidney
34	chr11:46073400-46093800	Weak transcription	Left Ventricle	heart
35	chr11:46073600-46089200	Weak transcription	Duodenum Mucosa	Duodenum
36	chr11:46073800-46122200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:46074000-46089200	Weak transcription	Psoas Muscle	Psoas
38	chr11:46074200-46101200	Weak transcription	Brain Substantia Nigra	brain
39	chr11:46077400-46093800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr11:46077600-46090800	Weak transcription	Osteobl	bone
41	chr11:46077600-46109400	Weak transcription	HepG2	liver
42	chr11:46079000-46128200	Weak transcription	Aorta	Aorta
43	chr11:46079600-46102200	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr11:46080400-46120800	Weak transcription	Stomach Smooth Muscle	stomach
45	chr11:46080600-46103000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr11:46082000-46114000	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr11:46083000-46092600	Strong transcription	Primary B cells from cord blood	blood
48	chr11:46083600-46092800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr11:46083600-46107600	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr11:46083800-46093800	Weak transcription	Fetal Lung	lung

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