Variant report

Variant	rs61882549
Chromosome Location	chr11:46070935-46070936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46056098..46058003-chr11:46069480..46071245,2	K562	blood:
2	chr11:46069599..46074824-chr11:46075109..46078382,5	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17787417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61882478	1.00[AFR][1000 genomes]
rs61882501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61882503	1.00[AFR][1000 genomes]
rs61882506	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61884127	1.00[AFR][1000 genomes]
rs61884130	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv972922	chr11:46067269-46071441	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46022000-46074600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr11:46039200-46077200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:46039400-46096800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:46041000-46071000	Weak transcription	Placenta	Placenta
5	chr11:46041400-46086600	Weak transcription	Fetal Intestine Large	intestine
6	chr11:46042000-46071000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:46042000-46071000	Weak transcription	Brain Angular Gyrus	brain
8	chr11:46043200-46071000	Weak transcription	Lung	lung
9	chr11:46043200-46086800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:46044400-46071000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr11:46044400-46071200	Weak transcription	Fetal Intestine Small	intestine
12	chr11:46045000-46087000	Weak transcription	Hela-S3	cervix
13	chr11:46049200-46071000	Weak transcription	Fetal Brain Male	brain
14	chr11:46049200-46078800	Weak transcription	Aorta	Aorta
15	chr11:46049400-46071000	Weak transcription	HSMM	muscle
16	chr11:46053200-46071000	Weak transcription	Gastric	stomach
17	chr11:46057400-46071000	Weak transcription	NHDF-Ad	bronchial
18	chr11:46059200-46071000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:46062000-46100800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:46062200-46071000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:46062200-46071000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:46062200-46071000	Weak transcription	Brain Hippocampus Middle	brain
23	chr11:46062200-46071600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr11:46062200-46071800	Weak transcription	Small Intestine	intestine
25	chr11:46062400-46071200	Weak transcription	Osteobl	bone
26	chr11:46062600-46071000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr11:46062600-46071200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr11:46063000-46086400	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr11:46063200-46073600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr11:46063200-46087200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr11:46063200-46119800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr11:46063400-46073200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr11:46063400-46086600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr11:46063600-46098000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:46063600-46104600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr11:46064000-46097600	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr11:46064200-46071200	Weak transcription	NH-A	brain
38	chr11:46064800-46072200	Strong transcription	Primary B cells from cord blood	blood
39	chr11:46066200-46086800	Weak transcription	Dnd41	blood
40	chr11:46067200-46074600	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr11:46067400-46071000	Weak transcription	Brain Anterior Caudate	brain
42	chr11:46067400-46086400	Weak transcription	Liver	Liver
43	chr11:46068000-46071200	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr11:46068000-46071200	Weak transcription	Left Ventricle	heart
45	chr11:46068000-46071600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr11:46068000-46073600	Weak transcription	K562	blood
47	chr11:46068200-46071000	Weak transcription	Psoas Muscle	Psoas
48	chr11:46068200-46071000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr11:46068400-46071600	Weak transcription	Ovary	ovary
50	chr11:46068400-46071800	Weak transcription	Brain Germinal Matrix	brain

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