Variant report

Variant	rs17795657
Chromosome Location	chr19:40097690-40097691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1433109	1.00[JPT][hapmap]
rs57713278	0.82[AMR][1000 genomes]
rs58916238	0.82[AMR][1000 genomes]
rs62120750	0.96[AFR][1000 genomes]
rs7251429	0.91[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060251	chr19:39982988-40099773	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv579509	chr19:40004640-40133438	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	esv34120	chr19:40044635-40131820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40097200-40098000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr19:40097400-40098000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr19:40097400-40098000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr19:40097400-40098400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr19:40097400-40098400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr19:40097400-40098600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr19:40097400-40099400	Enhancers	Placenta	Placenta
8	chr19:40097600-40098200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr19:40097600-40098800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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