Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr19:40085751-40092211	PANC-1	pancreas:	n/a	chr19:40089953-40089973 chr19:40089956-40089969 chr19:40089958-40089967 chr19:40089953-40089973 chr19:40089953-40089966 chr19:40089954-40089972 chr19:40089959-40089973 chr19:40089953-40089962 chr19:40089961-40089971 chr19:40089956-40089969 chr19:40089953-40089973
2	REST	chr19:40085749-40093889	PANC-1	pancreas:	n/a	chr19:40089953-40089973 chr19:40089956-40089969 chr19:40089958-40089967 chr19:40089953-40089973 chr19:40092973-40092991 chr19:40089953-40089966 chr19:40089954-40089972 chr19:40093618-40093636 chr19:40089959-40089973 chr19:40089953-40089962 chr19:40089961-40089971 chr19:40089956-40089969 chr19:40089953-40089973
3	FOS	chr19:40087647-40087895	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr19:40087647-40087893	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:40080859..40083652-chr19:40087227..40090109,2	K562	blood:

Variant related genes	Relation type
RPS29P26	TF binding region
ENSG00000243581	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10403625	0.81[EUR][1000 genomes]
rs10403763	1.00[CEU][hapmap]
rs10415807	0.85[EUR][1000 genomes]
rs10418049	1.00[CEU][hapmap];0.81[CHD][hapmap]
rs1433109	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16973498	0.81[EUR][1000 genomes]
rs17795657	0.91[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap]
rs2010106	0.83[EUR][1000 genomes]
rs2082483	0.80[EUR][1000 genomes]
rs57484954	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57713278	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58916238	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61288778	0.86[EUR][1000 genomes]
rs7248055	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72480723	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72480724	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7255034	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7260569	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73930747	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8100675	0.83[EUR][1000 genomes]
rs8101913	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.92[TSI][hapmap]
rs8108805	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060251	chr19:39982988-40099773	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv579509	chr19:40004640-40133438	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	esv34120	chr19:40044635-40131820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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