Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10403625	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10403763	0.88[ASN][1000 genomes]
rs10415807	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1433109	0.85[EUR][1000 genomes]
rs16973498	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2010106	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2082483	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57386718	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57484954	0.85[EUR][1000 genomes]
rs57713278	0.85[EUR][1000 genomes]
rs58916238	0.85[EUR][1000 genomes]
rs61288778	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7248055	0.85[EUR][1000 genomes]
rs72480723	0.85[EUR][1000 genomes]
rs7251429	0.82[EUR][1000 genomes]
rs7255034	0.85[EUR][1000 genomes]
rs7260569	0.82[EUR][1000 genomes]
rs73930747	0.85[EUR][1000 genomes]
rs8100675	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8101913	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911690	chr19:39903088-40046863	Weak transcription Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv911692	chr19:39979966-40046863	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1060251	chr19:39982988-40099773	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv579509	chr19:40004640-40133438	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40031200-40043600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr19:40031200-40049600	Weak transcription	Right Atrium	heart
3	chr19:40031400-40042200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr19:40033600-40042200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr19:40037800-40042400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr19:40038000-40042000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr19:40038000-40042200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr19:40038000-40042400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr19:40038400-40042200	Weak transcription	Placenta	Placenta
10	chr19:40038600-40048000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr19:40040800-40041600	Enhancers	GM12878-XiMat	blood
12	chr19:40041200-40048200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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