Variant report

Variant	rs2010106
Chromosome Location	chr19:40036070-40036071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:40035928..40038134-chr19:40045282..40047956,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10403625	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10403763	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10407315	0.84[AMR][1000 genomes]
rs10415807	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10418049	0.84[AMR][1000 genomes]
rs10426230	0.80[AMR][1000 genomes]
rs1433109	0.86[EUR][1000 genomes]
rs16973498	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2082483	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57386718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57484954	0.86[EUR][1000 genomes]
rs57713278	0.86[EUR][1000 genomes]
rs58916238	0.86[EUR][1000 genomes]
rs61288778	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7248055	0.86[EUR][1000 genomes]
rs72480723	0.86[EUR][1000 genomes]
rs72480724	0.81[EUR][1000 genomes]
rs7251429	0.83[EUR][1000 genomes]
rs7255034	0.86[EUR][1000 genomes]
rs7260569	0.83[EUR][1000 genomes]
rs73930747	0.86[EUR][1000 genomes]
rs8100675	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8101913	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8108805	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911690	chr19:39903088-40046863	Weak transcription Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv911692	chr19:39979966-40046863	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1060251	chr19:39982988-40099773	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv579509	chr19:40004640-40133438	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40031000-40037200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:40031200-40043600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr19:40031200-40049600	Weak transcription	Right Atrium	heart
4	chr19:40031400-40042200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr19:40032600-40038000	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr19:40032800-40036200	Enhancers	Placenta	Placenta
7	chr19:40032800-40038000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr19:40033400-40036600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr19:40033600-40042200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr19:40033800-40038000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr19:40034000-40037800	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr19:40034000-40038000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr19:40034200-40037600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr19:40034200-40038000	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr19:40034200-40038600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr19:40034600-40037400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr19:40034800-40037800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr19:40035400-40037400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr19:40035400-40038200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr19:40035600-40037400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr19:40035800-40037000	Weak transcription	NHEK	skin
22	chr19:40036000-40037000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr19:40036000-40037800	Enhancers	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links